Microbiología y Bioquímica

• Sobrino OJ, Alba C, Arroyo R, …Rodriguez JM. 2021. Replacement of metaphylactic antimicrobial therapy by oral administration of Ligilactobacillus salivarius MP100 in a pig farm. Frontiers in veterinary Science 8: 9666887. Doi: 10.3389/fvets.2021.666887
• Blanco-Míguez A, Tamés H, Ruas-Madiedo P, Sánchez B. 2021. Microbiota-derived β-amyloid-like peptides trigger alzheimer’s disease-related pathways in the sh-sy5y neural cell line. Nutrients 13:3868. doi: 10.3390/nu13113868.
• Barber C, Mego M, Sabater C, ….Azpiroz F. 2021. Differential effects of western and mediterranean-type diets on gut microbiota: a metagenomics and metabolomics. Nutrients 13:2638. Doi: 10.3390/nu13082638
• Gozalbo-Rovira R, Rubio del Campo A, Santiso-Bellón C, … Rodriguez-Díaz J. 2021. Interaction of intestinal bacteria with human rotavirus during infection in children. International Journal of Molecular Sciences 22:1010. doi: 10.3390/ijms22031010.
• Ruiz L, Alba C, García-Carral C, … Rodriguez JM. 2021Comparison of two approaches for the metataxonomic analysis of the human milk microbiome. Frontiers in cellular infection and microbiology 11:622550. Doi:10.3389/fcimb.2021.622550.
• Sabater C, Cobo-Díaz JF, Alvarez-Ordoñez A, Ruas-Madiedo P, Ruiz L, Margolles A. 2021. Novel methods of microbiome analysis in the food industry. International Microbiology 24(4):593-605. doi: 10.1007/s10123-021-00215-8
• Lugli GA, Calvete-Torre I, Alessandri G, …, Ventura M. (Ruiz L 7/8) 2021. Phylogenetic classification of ten novel species belonging to the genus Bifidobacterium comprising B. phasiani sp. nov., B. pongonis sp. nov., B. saguinibicoloris sp. nov., B. colobi sp. nov., B. simiiventris sp. nov., B. santillanense sp. nov., B. miconis sp. nov., B. amazonense sp. nov., B. pluvialisilvae sp. nov., and B. miconisargentati sp. nov. Systematic and Applied Microbiology 44(6): 126273. Doi: 10.1016/j.syapm.2021.126273
• Pace RM, Williams JE, Robertson B, Lackey KA, Meehan CL, Price WJ, Foster JA, Sellen DW, Kamau-Mbuthia EW, Kamundia EW, Mbugua S, Moore S, Prentice AM, Kita DG, Kvist LJ, Otoo GE, Ruiz L, Rodriguez J; Pareja RG, McGuire MA, Bode L, McGuire MK. 2021. Variation in human milk composition is related to differences in milk and infant fecal microbial communities. Microorganisms 9(6):1153. Doi:10.3390/microorganisms9061153.
• Guadamuro L, Azcárate-Peril MA, Tojo R, Mayo B, Delgado S. 2021. Impact of dietary isoflavone supplementation on the fecal microbiota and its metabolites in postmenopausal women. International journal of environmental research and public health. 18: 7939. DOI: 10.3390/ijerph18157939
• Sabater C, Molinero N, Ferrer M, García-Bernardo C, Delgado S, Margolles A. 2021. Functional characterization of bile metagenome: study of metagenomic dark matter. Microorganisms 9: 2201. Doi: 10.3390/microorganisms9112201
• Del Pozo-Acebo L, Lopez de las Hazas MC, Margolles A, Davalos A, García-Ruiz A. 2021. Eating ncRNA: pharmacological opportunities for cross-kingdom regulation and implications in host gene and gut microbiota modulation. British Journal of Pharmacology 178:2218-2245. doi: 10.1111/bph.15421
• Marcos-Fernández R, Ruiz L, Blanco-Míguez A, Margolles A, Sánchez B. 2021. Precision modification of the human gut microbiota targeting surface-associated proteins. Scientific Reports 11:1270. doi: 10.1038/s41598-020-80187-3.
• Sabater C, Blanco-Doval A, Margolles A, Corzo N, Montilla A. 2021. Artichoke pectic oligosaccharide characterisation and virtual screening of prebiotic properties using in silico colonic fermentation. Carbohydrate Polymers 255:117367. doi: 10.1016/j.carbpol.2020.117367
• Calvete-Torre I, Muñoz-Almagro N, Pacheco MT, Antón MJ, Dapena E, Ruiz L, Margolles A, Villamiel M, Moreno FJ. 2021. Apple pomaces derived from mono-varietal Asturian ciders production are potential source of pectins with appealing functional properties. Carbohydrate Polymers 264:117980. doi: 10.1016/j.carbpol.2021.117980.
• Sabater C, Calvete-Torre I, Villamiel M, Moreno FJ, Margolles A, Ruiz L. 2021. Vegetable waste and by-products to feed a healthy gut microbiota: current evidence, machine learning and computational tools to design novel microbiome-targeted foods. Trends in Food Science & Technology 118:399. Doi: /10.1016/j.tifs.2021.10.002
• Sabater C, Ruiz L, Margolles A. 2021. A machine learning approach to study glycosidase activities from Bifidobacterium. Microorganisms 9:1034. Doi: 10.3390/microorganisms9051034
• Molinero N, Conti E, Sánchez B, Walker AW, Margolles A, Duncan SH, Delgado S. 2021. Ruminococcoides bili gen. nov., sp. nov., a bile.resistant bacterium from human bile with autolytic behaviour. International Journal of Systematic and Evolutionary Microbiology 71. Doi: 10.1099/ijsem.0.004960
• Lugli GA, Alessandri G, Milani C, Viappiani A, Fontana F, Tarracchini C, Mancabelli L, Argentini C, Ruiz L, Margolles A, van Sinderen D, Turroni F, Ventura M. 2021. Genetic insights into the dark matter of the mammalian gut microbiota through targeted genome reconstruction. Environmental Microbiology 23:3294-3305. doi: 10.1111/1462-2920.15559
• Cobo-Díaz JF, Alvarez-Molina A, Alexa EA, Walsh CG, Mencía-Ares O, Puente-Gómez P, Likotrafiti E, Fernández-Gómez P, Prieto B, Crispie F, Ruiz L, González-Raurich M, López M, Prieto M, Cotter P, Alvarez-Órdoñez A. 2021. Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity. Microbiome 14, 9(1):204. doi: 10.1186/s40168-021-01131-9
• Gutiérrez D, Rodriguez-Rubio L, Ruas-Madiedo P, Fernández L, Campelo AB, Briers Y, Nielsen MW, Pedersen K, Lavigne R, García P, Rodriguez A. 2021. Design and selection of engineered lytic proteins with Staphylococcus aureus decolonizing activity. Frontiers in Microbiology 12:723834. Doi: 10.3389/fmicb.2021.723834
• Blanco G, Sánchez B, Ruiz L, Fdez-Riverola F, Margolles A, Lourenço A. 2021. Computational approach to the systematic prediction of glycolytic abilities: looking into human microbiota. IEEE/ACM Transactions on Computational Biology and Bioinformatics 18(6):2302-2313. DOI: 10.1109/TCBB.2020.2978461
• Besrour-Aouam, N.; Fhoula, I.; Hernandez-Alcantara, A.M.; Mohedano, M.L.; Najjari, A.; Prieto, A.; Ruas-Madiedo, P.; Lopez, P.; and Ouzari, H.I. The role of dextran production in the metabolic context of Leuconostoc and Weissella Tunisian strains. Carbohydrate Polymers 253: 117254 (2021). DOI: 10.1016/j.carbpol.2020.117254.
• Nogacka, A.M, de los Reyes-Gavilán, C.G., Martínez-Faedo, C., Ruas-Madiedo, P., Suarez, A., Mancabelli, L., Ventura, M. Cifuentes, A., León, C., Gueimonde, M. and Salazar, N. Impact of Extreme Obesity and Diet-Induced Weight Loss on the Fecal Metabolome and Gut Microbiota. Molecular Nutrition and Food Research. 65: 2000030 (2021). DOI:10.1002/mnfr.202000030.
• Nogacka, A.M, de los Reyes-Gavilán, C.G., Arboleya, S., Ruas-Madiedo, P., Martinez-Faedo, C., Suarez, A., He, F., Harata, G., Endo, A., Salazar, N, and Gueimonde, M. In vitro selection of probiotics for microbiota modulation in normal-weight and severely obese individuals: focus on gas production and interaction with intestinal epithelial cells impact of extreme obesity and diet-induced weight loss on the fecal metabolome and gut microbiota. Frontiers in Microbiology. 12:630572 (2021). DOI: 10.3389/fmicb.2021.630572
• Derriche, I., Nogacka, A.M., Salazar, N., Ruas-Madiedo, P., Gueimonde, M., Bensalah, F., de los Reyes-Gavilán, C.G. Effect of inulin-type fructans and galactooligosaccharides on cultures of Lactobacillus strains isolated in Algeria from camel’s milk and human colostrum. Food Science and Technology International. 27:223-233 (2021). DOI: 10.1177/1082013220944661.
• Rebaza-Cardenas, T.D., Silva-Cajaleón, K., Sabater, C., Delgado, S., Montes-Villanueva, N.D., and Ruas-Madiedo, P. “Masato de Yuca” and “Chicha de Siete Semillas” Two Traditional Vegetable Fermented Beverages from Peru as Source for the Isolation of Potential Probiotic Bacteria. Probiotics and Antimicrobial Proteins. (in press: Published 27 August 2021). DOI: 10.1007/s12602-021-09836-x.: A. IF: 4.609 “Microbiology” (según último JCR de 2020) (Q2).

• Abdelkader, K; Gutiérrez, D; Grimon, D; Ruas-Madiedo, P; Lood, C; Lavigne, R; Safaan, A; Khairalla, AS; Gaber, Y; Dishisha, T and Briers, Y. Lysin LysMK34 of Acinetobacter baumannii Bacteriophage PMK34 Has a Turgor Pressure-Dependent Intrinsic Antibacterial Activity and Reverts Colistin Resistance. Appl Environ Microbiol 86:e01311-20. Doi:10.1128/AEM.01311-20.
• Sabater C, Ruiz L, Delgado S, Ruas-Madiedo P, Margolles A. 2020. Valorization of vegetable food waste and by-products through fermentation processes. Frontiers in Microbiology 11, 581997. doi: 10.3389/fmicb.2020.581997
• Alexa, EA; Walsh, CJ; Coughlan, LM; Awad, A; Simon, CA; Ruiz, L; Crispie, F; Cotter, PD and Alvarez-Ordóñez, A. Dairy Products and Dairy-Processing Environments as a Reservoir of Antibiotic Resistance and Quorum-Quenching Determinants as Revealed through Functional Metagenomics. mSystems. 2020 Feb 18;5(1):e00723-19.
• Álvarez-Molina, A; de Toro, M; Ruiz, L; López, M; Prieto, M and Alvarez-Ordóñez, A. Selection for Antimicrobial Resistance in Foodborne Pathogens through Exposure to UV Light and Nonthermal Atmospheric Plasma Decontamination Techniques. Appl Environ Microbiol. 2020 Apr 17;86(9):e00102-20.
• Bachtarzi, N; Speciale, I; Kharroub, K; de Castro, C; Ruiz, L and Ruas-Madiedo P. Selection of Exopolysaccharide-Producing Lactobacillus Plantarum (Lactiplantibacillus Plantarum) Isolated from Algerian Fermented Foods for the Manufacture of Skim-Milk Fermented Products. Microorganisms. 2020 Jul 23;8(8):1101. doi:10.3390/microorganisms8081101
• Blanco, G; Ruiz, L; Tamés, H; Ruas-Madiedo, P; Fdez-Riverola, F; Sánchez, B; Lourenço, A and Margolles, A. 2020. Revisiting the metabolic capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a glycoside hydrolase perspective. Microorganisms 8:723 (13 páginas). DOI: 10.3390/microorganisms8050723.
• Gutierrez B, Gallardo I, Ruiz L, Álvarez Y, Cachofeiro V, Margolles A, Hernández M, Nieto ML. 2020. Oleanolic acid ameliorates intestinal alterations associated with EAE. Journal of Neuroinflammation 17(1):363. doi: 10.1186/s12974-020-02042-6.
• Cambeiro-Pérez, N; Hidalgo-Cantabrana, C; Moro-García, MA; Blanco-Míguez, A; Fdez-Riverola, F; Riestra, S; Lourenço, A; Alonso-Arias, R; Margolles, A; Martínez-Carballo, E and Sánchez, B. 2020. In silico and functional analyses of immunomodulatory peptides encrypted in the human gut metaproteome. Journal of Functional Foods 70:103969 (11 páginas). DOI: 10.1016/j.jff.2020.103969.
• Delgado, S; Sánchez, B; Margolles, A; Ruas-Madiedo, P and Ruiz L. 2020. Molecules produced by probiotics and intestinal microorganisms with immunomodulatory activity. Nutrients 12:391 (14 páginas). DOI: 10.3390/nu12020391.
• Derriche, I; Nogacka, AM; Salazar, N; Ruas-Madiedo, P; Gueimonde, M; Bensalah, F and G. de los Reyes-Gavilán, C.  Effect of inulin-type fructans and galactooligosaccharides on cultures of Lactobacillus strains isolated in Algeria from camel’s milk and human colostrum. Food Science and Technology International, 27(3): 223-233. doi: 10.1177/1082013220944661.
• Duranti, S; Ruiz, L; Lugli, GA; Tames, H; Milani, C; Mancabelli, L; Mancino, W; Longhi, G; Carnevali, L; Sgoifo, A; Margolles, A; Ventura, M; Ruas-Madiedo, P and Turroni, F. 2020. Bifidobacterium adolescentis as a key member of the human gut microbiota in the production of GABA. Scientific Reports 10:14112 (13 páginas). Q1. DOI: 10.1038/s41598-020-70986-z.
• Garcia-Gutierrez, E; Walsh, CJ; Sayavedra, L; Diaz-Calvo, T; Thapa, D; Ruas-Madiedo, P; Mayer, MJ; Cotter, PD and Narbad, A. Genotypic and Phenotypic Characterization of Fecal Staphylococcus epidermidis Isolates Suggests Plasticity to Adapt to Different Human Body Sites. Front. Microbiol. 11:688.doi: 10.3389/fmicb.2020.00688
• Hidalgo-Cantabrana, C; Moro-García, MA; Blanco-Míguez, MA; Fdez-Riverola, F; Oliván, M; Royo, L; Riestra, S; Margolles, A; Lourenço, A; Alonso-Arias, R and Sánchez, B. 2020. The extracellular proteins of Lactobacillus acidophilus DSM 20079T display anti-inflammatory effect in both in piglets, healthy human donors and Crohn’s Disease patients. Journal of Funtional Foods 64:103660 (10 páginas). DOI: 10.1016/j.jff.2019.103660.
• Lugli, GA; Alessandri, A; Milani, C; Mancabelli, L; Ruiz, L; Borragán, S; González, A; Turroni, F; Ossiprandi, MC; Margolles, A; van Sinderen, D and Ventura M. 2020. Evolutionary development and co-phylogeny of primate-associated bifidobacteria. Environemental Microbiology 22:3375-3393. DOI: 10.1111/1462-2920.15108.
• Marcos-Fernández, R; Ruiz, L; Blanco-Míguez, A; Margolles, A and Sánchez, B. 2020. Cell wall hydrolase as a surface-associated protein target for the specific detection of Lactobacillus rhamnosus using flow cytometry. Innovative Food Science and Emerging Technologies 59:102240 (8 páginas). OI: 10.1016/j.ifset.2019.102240.
• Nogacka, AM; Salazar, N; Arboleya, S; Ruas-Madiedo, P; Mancabelli, L; Suarez, A; Martinez-Faedo, C; Ventura, M; Tochio, T; Hirano, K; Endo, A; G. de Los Reyes-Gavilán, C and Gueimonde, M. In Vitro Evaluation of Different Prebiotics on the Modulation of Gut Microbiota Composition and Function in Morbid Obese and Normal-Weight Subjects. Int. J. Mol. Sci. 2020, 21, 906; doi:10.3390/ijms21030906.
• Turroni F, Milani C, Duranti S, Lugli GA, Bernasconi S, Margolles A, Di Pierro F, van Sinderen D, Ventura M. 2020. The infant gut microbiome as a microbial organ influencing host well-being. Italian Journal of Pediatrics 46 (1): 16. doi: 10.1186/s13052-020-0781-0.
• Sabater, C; Molinero, N; Castro-Bravo, N; Diez-Echave, P; Hidalgo-García, L; Delgado, S; Sánchez, B; Gálvez, J; Margolles, A and Ruas-Madiedo, P. 2020. Exopolysaccharide producing Bifidobacterium animalis subsp. lactis strains modify the intestinal microbiota and the plasmatic cytokine levels of BALB/c mice according to the type of polymer synthesised. Frontiers in Microbiology 11:601233. doi: 10.3389/fmicb.2020.601233.
• Sabater, C; Ruiz, L; Delgado, S; Ruas-Madiedo, P and Margolles A. 2020. Valorization of vegetable food waste and by-products through fermentation processes. Frontiers in Microbiology 11:581997 (11 paginas). DOI: 10.3389/fmicb.2020.581997.
• Sokovic-Bajic, S., Mihajlovic, S.B., Radojevic, D.D. Popovic, D.D., Djokic, J.M., Stanisavljevic, S.M., Lazarevic, M.N., Miljkovic, D.M., Ruas-Madiedo, P., Golic, N.E., Tolinacki, M.S. Characterization of pH resistance and the proteolytic activity of GABA producing Lactobacillus brevis BGZLS10-17 in preparation of fermented milk beverage and the effects on the symptoms of the experimental autoimmune encephalomyelitis. Journal of the Serbian Chemical Society 85(2): 163-176 (2020). DOI: 10.2298/JSC190716094S.
• Sokovic-Bajic, S; Cañas, MA; Tolinacki, M; Badia, J; Sánchez, B; Golic, N; Margolles, A; Baldomá, L and Ruas-Madiedo, P. 2020. Proteomic profile of extracellular vesicles released by Lactiplantibacillus plantarum BGAN8 and their internalization by non-polarized HT29 cell line. Scientific Reports, 10:21829; doi: 10.1038/s41598-020-78920-z
• Ruiz, L., Flórez, A.B., Sánchez, B., Moreno-Muñoz, J.A., Rodriguez-Palmero, M., Jiménez, J., de los Reyes Gavilán, C.G., Gueimonde, M., Ruas-Madiedo, P., and Margolles, A. Bifidobacterium longum subsp. infantis CECT7210 (B. infantis IM-1®) Displays In Vitro Activity against Some Intestinal Pathogens. Nutrients 12: 3259 (2020). DOI: 10.3390/nu12113259
• Lugli GA, Tarracchini C, Alessandri G, Milani C, Mancabelli L, Turroni F, Neuzil-Bunesova V, Ruiz L, Margolles A, Ventura M. Decoding the genomic variability among members of the Bifidobacterium dentium species. Microorganisms 8: E1720 (2020). DOI: 10.3390/microorganisms8111720

PUBLICACIONES EN REVISTAS CIENTÍFICAS NO SCI

• Requena, T., Ruas-Madiedo, P. La funcionalidad de los vegetales y su mejora a través del procesado. Tecnifood, Junio (2020), pp. 26-28.
• González-González, F., Menéndez, J., Villastrigo, M., Margolles, A., Ruas-Madiedo, P. Revalorización de suero de pequeñas queserías. Tecnifood, Diciembre (2020), pp. 82-84.

PUBLICACIONES SCI 

• Delgado, S; Guadamuro, L; Flórez, AB; Vázquez, L and Mayo, B. Título: Fermentation of commercial soy beverages with lactobacilli and bifidobacteria strains featuring high β-glucosidase activity. Innovative Food Science and Emerging Technologies Clave: A. Volumen:51. Páginas, inicial: 148. final:155. Fecha: 2019.
• Ruiz, L; García-Carral, C and Rodríguez, JM.  Unfolding the human milk microbiome landscape in the omics era. Frontiers in Microbiology 2019 (doi: 10.3389/fmicb.2019.01378)
• Ruiz, L; Bacigalupe, R; García-Carral, C; Boix-Amoros, A; Argüello, H; Silva, CB; Ángeles Checa, M; Mira, A and Rodríguez, JM.  Microbiota of human precolostrum and its potential role as a source of bacteria to the infant mouth. Scientific Reports 2019 9:8435.
• Lane, AA; McGuire, MK; McGuire, MA; Williams, JE; Lackey, KA; Hagen, EH; Kaul, A; Gindola, D; Gebeyehu, D; Flores, KE; Foster, JA; Sellen, DW; Kamau-Mbuthia, E; Kamundia, E; Mbugua, S; Moore, SE; Prentice, AM; Kvist, LJ; Otoo, G; Rodríguez, JM; Ruiz, L; Pareja, RG; Bode, L; Price, WJ and Meehan, CL.  Household composition and the infant fecal microbiome: an international multi-population study. American Journal of Physical Anthropology 2019; 1-14.
• Aparicio, M; Castro, I; Alba, C; Jara, J; Orgaz, B; Fernández, L; Ruiz, L and Rodriguez, JM.  The microbiome of human milk. Annals of Nutrition and Metabolism 2019 74(suppl 1):1-31 . doi: 10.1159/000496759.
• Margolles, A; Sánchez, B; Ruas-Madiedo, P; Delgado, S and Ruiz, L. 2019. Fecal Microbiota Transplantation: Historical Perspective and Future Trends. Annals of Nutrition and Metabolism 74(Suppl. 1; not available on-line):64-68.
• Molinero, N; Ruiz, L; Sánchez, B; Margolles, A and Delgado, S. 2019. Intestinal Bacteria Interplay With Bile and Cholesterol Metabolism: Implications on Host Physiology. Frontiers in Physiology 10:185 (10 páginas). DOI: 10.3389/fphys.2019.00185.
• Castro-Bravo, N; Margolles, A; Wells, JM and Ruas-Madiedo, P. 2019. Exopolysaccharides synthesized by Bifidobacterium animalis subsp. lactis interact with TLR4 in intestinal epithelial cells. Anaerobe 56:98-101. DOI: 10.1016/j.anaerobe.2019.02.014.
• Blanco, G; Sánchez, B; Fdez-Riverola, F; Margolles, A and Lourenço, A. 2019. In silico Approach for Unveiling the Glycoside Hydrolase Activities in Faecalibacterium prausnitzii Through a Systematic and Integrative Large-Scale Analysis. Frontiers in Microbiology 10:517 (12 páginas). DOI: 10.3389/fmicb.2019.00517.
• Hidalgo-Cantabrana, C; Gómez, J; Delgado, S; Requena-López, S; Queiro-Silva, R; Margolles, A; Coto, E; Sánchez, B and Coto-Segura, P. 2019. Gut microbiota dysbiosis in a cohort of psoriasis patients. British Journal of Dermatology. DOI: 10.1111/bjd.17931.
• Martínez, N; Hidalgo-Cantabrana, C; Delgado, S; Margolles, A and Sánchez, B. 2019. Filling the gap between collection, transport and storage of the human gut microbiota. Scientific Reports 9:8327 (8 páginas). DOI: 10.1038/s41598-019-44888-8.
• Gharbi, Y; Fhoula, I; Ruas-Madiedo, P;  Afef, N; Boudabous, A; Gueimonde, M and Ouzari, HI. In-vitro characterization of potentially probiotic Lactobacillus strains isolated from human microbiota: interaction with pathogenic bacteria and the enteric cell line HT29. Annals of Microbiology 69:61–72 (2019). DOI: 10.1007/s13213-018-1396-1.
• Llamas-Arriba, MG; Puertas, AI; Prieto, A; López, P; Cobos, M; Miranda, JI; Marieta, C;  Ruas-Madiedo, P and Dueñas MT. Characterization of dextrans produced by Lactobacillus mali CUPV271 and Leuconostoc carnosum CUPV411. Food Hydrocolloids 89: 613–622 (2019). DOI: 10.1016/j.foodhyd.2018.10.053.
• Bachtarzi, N; Kharroub, K and Ruas-Madiedo, P. Exopolysaccharide-producing lactic acid bacteria isolated from traditional Algerian dairy products and their application for skim-milk fermentations. LWT – Food Science and Technology 107: 117–124 (2019). DOI: 10.1016/j.lwt.2019.03.005.
• del Rio, B; Redruello, B; Linares, DM; Ladero, V; Ruas-Madiedo, P; Fernández, M; Martín, MC and Álvarez, MA.  The biogenic amines putrescine and cadaverine show in vitro cytotoxicity at concentrations that can be found in foods. Scientific Reports 9: 120 (2019). DOI: 10.1038/s41598-018-36239-w.
• Benítez-Cabello, A; Romero-Gil, V; Medina, E; Sánchez, B; Calero-Delgado, B; Bautista-Gallego, J; Jiménez-Díaz R and Arroyo-López FN. Metataxonomic analysis of the bacterial diversity in table olive dressing components. (2019). Food Control. https://doi.org/10.1016/j.foodcont.2019.05.036
• López-Fernández, H; Blanco-Míguez, A; Fdez-Riverola, F; Sánchez, B and Lourenço, A. DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research. (2019). Computers in biology and medicine 107, 197-205
• Blanco-Míguez, A;  Blanco, G;  Gutierrez-Jácome, A; Fdez-Riverola, F; Sánchez, B and Lourenço, A. Computational prediction of the bioactivity potential of proteomes based on expert knowledge. (2019). Journal of biomedical informatics 91, 103121
• Blanco-Míguez, A; Fdez-Riverola, F; Lourenço, A and Sánchez. B. In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota. (2019). Food Research International. https://doi.org/10.1016/j.foodres.2019.01.069
• Fernández-Tomé, S; Montalbán-Arques, A; Díaz-Guerra, A; Galván-Román, JM; Marín, AC; Mora-Gutiérrez, I; Ortega Moreno, L; Santander, C; Sánchez, B; Chaparro, M; Gisbert, JP and Bernardo, D. Peptides encrypted in the human intestinal microbial-exoproteome as novel biomarkers and immunomodulatory compounds in the gastrointestinal tract. (2019). Journal of Functional Foods 52, 459-468

PUBLICACIONES EN REVISTAS CIENTÍFICAS NO SCI

• Ruiz, L and van Sinderen, D. Chapter 5: Implementation of transposon mutagenesis in Bifidobacterium. “Microbial Transposon Mutagenesis: Protocols and Applications”, Methods in Molecular Biology, vol. 2016, Steven C. Ricke et al. (eds) Springe Nature 2019 IN PRESS
• Ruiz, L and Álvarez-Ordoñez, A. Chapter 2: Molecular tools for food micro-ecosystems assessment. Food Molecular Microbiology. Spiros Paramithiotis, Jayanta K Patra, (eds.) CRC Press. 2019. ISBN 9781138088085

• Fernández-Navarro, T; Salazar, N; Gutiérrez-Díaz, I; Sánchez, B; Ruas-Madiedo, P; de los Reyes-Gavilán, CG; Margolles, A; Gueimonde, M and González, S. 2018. Bioactive compounds from regular diet on faecal microbial metabolites. European Journal of Nutrition 57:487-497.
• Martínez, N; Luque, R; Milani, C; Ventura, M; Bañuelos, O and Margolles, A. 2018. A gene homologous to rRNA methylase genes confers erythromycin and clindamycin resistance in Bifidobacterium breve. Applied and Environmental Microbiology 84:e02888-17.
• del Campo, R; Alarcón, T; D’Auria, G; Delgado, S and Ferrer, M. 2018. Microbiota and Human Health: characterization techniques and transference. Enfermedades Infecciosas y Microbiología Clínica 36:241-245.
• Valdés-Varela, L; Gueimonde, M and Ruas-Madiedo, P. 2018. Probiotics for prevention and treatment of Clostridium difficile Infection. Advances in Microbiology, Infectious Diseases and Public Health 8:161-176.
• Alhudhud, M; Sadiq, S; Ngo, HN; Hidalgo-Cantabrana, C; Ruas-Madiedo, P; van Sinderen, D; Humphreys, PN and Laws, AP. 2018. Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve. Beneficial Microbes 9:663-674.
• Sánchez B. 2018. Bile acid-microbiota crosstalk in gastrointestinal inflammation and carcinogenesis: a role for bifidobacteria and lactobacilli? Nature Review Gastroenterology Hepatology 15:205.
• Fernández, L; Ruiz, L; Jara, J; Orgaz, B and Rodriguez, JM.  Strategies for the preservation, restoration and modulation of the human milk microbiota. Implications for human milk banks and neonatal intensive care units. Frontiers in Microbiology 2018, 9:2676. doi: 10.3389/fmicb.2018.02676.   
• Ruiz, L; López, P; Suárez, A; Sánchez B and Margolles, A. 2018. The role of gut microbiota in lupus: what we know in 2018? Expert Rev Clin Immunol 14:787-792. DOI: 10.1080/1744666X.2018.1519395.
• Gutiérrez-Díaz, I; Molinero, N; Cabrera, A; Rodríguez, JI; Margolles, A; Delgado, S and González S. 2018. Diet: cause or consequence of the microbial profile of cholelithiasis disease? Nutrients 10:1307 (13 páginas). DOI: 10.3390/nu10091307.
• Díaz, M; Guadamuro, L; Espinosa-Martos, I; Mancabelli, L; Jiménez, S; Molinos-Norniella, C; Pérez-Solis, D; Milani, C; Rodríguez, JM; Ventura, M; Bousoño, C; Gueimonde, M; Margolles, A; Díaz, JJ and Delgado, S. 2018. Microbiota and derived parameters in fecal samples of infants with non-IgE cow’s milk protein allergy under a restricted diet. Nutrients 10:1481 (11 páginas). DOI: 10.3390/nu10101481.
• Castro-Bravo, N; Wells, JM; Margolles, A; Ruas-Madiedo, P. 2018. Interactions of surface exopolysaccharides from Bifidobacterium and Lactobacillus within the intestinal environment. Frontiers in Microbiology 9:2426 (15 páginas). DOI: 10.3389/fmicb.2018.02426.
• Del Río, B; Redruello, B; Linares, DM; Ladero, V; Ruas-Madiedo, P; Fernández M; Martín MC and Álvarez MA. Spermine and spermidine are cytotoxic towards intestinal cell cultures, but are they a health hazard at concentrations found in foods?. Food Chemistry 269: 321–326 (2018). DOI: 10.1016/j.foodchem.2018.06.148,
• Nogacka, AM; Ruas-Madiedo, P; Gómez, E; Solís, G; Fernández, N; Suárez, M; Suárez, A; Salazar, N; de los Reyes-Gavilán CG and Gueimonde, M. Real-time monitoring of HT29 epithelial cells as an in vitro model for assessing functional differences among intestinal microbiotas from different human population groups. Journal of Microbiological Methods 152: 210–216 (2018). DOI: 10.1016/j.mimet.2018.07.003,
• Blanco-Míguez, A; Fdez-Riverola, F; Sánchez, B and Lourenço. A BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results.
• (2018). PloS one 13 (10), e0205286.
• Hidalgo-Cantabrana, C; Lucena-Prieto, MR; Moro-García, MA; Alonso-Arias, R and Sánchez, B. Whole fractions from probiotic bacteria induce in vitro Th17 responses in human peripheral blood mononuclear cells. 2018. Journal of Functional Foods 48, 367-373
• Cambeiro-Pérez, N; Hidalgo-Cantabrana, C; Moro-García, MA; Alonso-Arias, R; Simal-Gándara, J; Sánchez, B and Martínez-Carballo, E. A Metabolomics Approach Reveals Immunomodulatory Effects of Proteinaceous Molecules Derived From Gut Bacteria Over Human Peripheral Blood Mononuclear Cells. (2018). Frontiers in microbiology 9 (2701)

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• Delgado, S; Ruiz, L; Hevia, A; Ruas-Madiedo, P; Margolles, A and Sánchez, B. Evidence of the in vitro and in vivo immunological relevance of bifidobacteria.B.J.B. Wood, P. Mattarelli, B. Biavati and W.H. Holzapfel (eds.).The bifidobacteria and related organisms. Biology, taxonomy, applications. Elsevier Inc., Philadelphia, USA (2018). ISBN: 978-0-12-805060-6.
• Castro-Bravo, N; Sánchez, B; Margolles, A and Ruas-Madiedo, P. Biological activities and applications of bifidobacterial exopolysaccharides: from the bacteria and host perspective.  B.J.B. Wood, P. Mattarelli, B. Biavati and W.H. Holzapfel (eds.). The bifidobacteria and related organisms. Biology, taxonomy, applications. Elsevier Inc., Philadelphia, USA (2018). ISBN: 978-0-12-805060-6.
• Hidalgo-Cantabrana, C; Delgado, S; Ruiz, L; Ruas-Madiedo, P; Sánchez, B and Margolles, A. Bifidobacteria and their health-promoting effects. R. Britton and P. Cani (eds.). Bugs as Drugs: Therapeutic Microbes for the Prevention and Treatment of Disease. ASM Press, Washington, D.C., USA (2018). ISBN: 9781555819699.
• Valdés-Varela, L; Gueimonde, M and Ruas-Madiedo, P. Probiotics for the prevention and treatment of Clostridium difficile infection Updates on Clostridium difficile in Europe. P. Mastrantonio, M. Rupnik (eds.) Advances in Miciobiology, Infections Deseases and Public Health, Vol 8. Springer, Cham Switzerland. (ISBN 978-3-319-72798-1) 2018 Pp.161-176. El contenido de este capítulo también se ha publicado como artículo científico en la revista SCI Advances in Microbiology, Infectious Diseases and Public Health (8:161-176,DOI: 10.1007/978-3-319-72799-8_10).

• Del Río B, Redruello B, Linares DM, Ladero V, Fernández M, Martín MC, Ruas-Madiedo P, Álvarez MA. 2017. The dietary biogenic amines tyramine and histamine show synergistic toxicity towards intestinal cells in culture. Food Chemistry 218: 249–255.
• Valdés-Varela L, Ruas-Madiedo P, Gueimonde M. 2017. In vitro fermentation of different fructo-oligosaccharides by Bifidobacterium strains for the selection of synbiotic combinations. International Journal of Food Microbiology 242: 19–23.
• Castro-Bravo, N.; Hidalgo-Cantabrna, C.; Rodriguez-Carvajal, M.A.; Ruas-Madiedo, P.* and Margolles, A. 2017. Gene replacement and fluorescent labeling to study the functional role of exopolysaccharides in Bifidobacterium animalis subsp. lactis. Frontiers in Microbiology 8:1405.
• Inturri, R.; Molinaro, A.; Di Lorenzo, F.; Blandino, G.; Tomasello, B.; Hidalgo-Cantabrana, C.; De Castro, C. and Ruas-Madiedo, P.*. 2017. Chemical and biological properties of the novel exopolysaccharideproduced by a probiotic strain of Bifidobacterium longum. Carbohydrate Polymers 174: 1172–1180.
• Zarour, K.; Llamas, M.G.; Prieto, A.; Ruas-Madiedo, P.; Dueñas, M.T.; Fernández de Palencia, P.; Aznar, R.; Kihal M. and López P.*. 2017. Rheology and bioactivity of high molecular weight dextranssynthesised by lactic acid bacteria. Carbohydrate Polymers 174:646–657.
• Motato, K.E.; Milani, C.; Ventura, M.; Valencia, F.E.; Ruas-Madiedo, P. and Delgado, S.*. 2017 Bacterial diversity of the Colombian fermented milk “Suero Costeño” assessed by culturing and high-throughput sequencing and DGGE analysis of 16S rRNA gene amplicons. Food Microbiology 68:129-136.
• Gutiérrez, D*.; Fernández, L.; Martínez, B.; Ruas-Madiedo, P*. García, P. and Rodríguez, A. 2017 Monitoring in real time the formation and removal of biofilms from clinical related pathogens using an impedance-based technology. Frontiers in Microbiology 8:1632.
• Valdés, L.; Salazar, N.; González, S.; Arboleya, S.; Ríos-Covián, D.; Genovés, S.; Ramón, D.; de los Reyes-Gavilán, C.G.; Ruas-Madiedo, P. and Gueimonde, M. 2017. Selection of potential probiotic bifidobacteria and prebiotics for elderly by using in vitro faecal batch cultures. European Food Research and Technology 243: 157-165.
• Fernández-Navarro T, Salazar N, Gutiérrez-Díaz I, Sánchez B, Ruas-Madiedo P, de los Reyes-Gavilán CG, Margolles A, Gueimonde M, González S. 2017. Bioactive compounds from regular diet on faecal microbial metabolites. European Journal of Nutrition (doi: 10.1007/s00394-016-1332-8).
• Rodríguez-Carrio J, López P, Sánchez B, González S, Gueimonde M, Margolles A, de los Reyes-Gavilán CG, Suárez A. 2017. Intestinal dysbiosis is associated with altered short chain fatty acids and serum free fatty acids in systemic lupus erythematosus. Frontiers in Immunology (doi: 10.3389/fimmu.2017.00023).
• Sánchez B, Delgado S, Blanco-Míguez A, Lourenço A, Gueimonde M, Margolles A. 2017. Probiotics, gut microbiota and their influence on host health and disease. Molecular Nutrition & Food Research 61:doi: 10.1002/mnfr.201600240.
• Ruiz, A.; Cerdó, T.; Jáuregui, R.; Pieper, D.H.; Marcos, A.; Clemente, A.; García, F.; Margolles, A.; Ferrer, M.; Campoy, C. and Suárez, A.*. 2017. One-year calorie restriction impacts gut microbial composition but not its metabolic performance in obese adolescents. Environmental Microbiology 19:1536-1551.
• González, S.; Gutiérrez-Díaz, I.; López, P.; Suárez, A.; Fernández-Navarro, T.; Sánchez, B. and Margolles, A.*. 2017. Microbiota and oxidant-antioxidant balance in systemic lupus erythematosus. Nutrición Hospitalaria 34:934-941.
• Rodríguez-Carrio, J.; Salazar, N.; Margolles, A.; González, S.; Gueimonde, M.; de los Reyes-Gavilán, C.G.* and Suárez, A. 2017. Free Fatty Acids profiles are related to gut microbiota signatures and short chain fatty acids. Frontiers in Immunology 8:823.
• Blanco-Míguez, A.; Fdez-Riverola, F.; Sánchez, B*. and Lourenço, A. 2017. Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. Briefings in Bioinformatics doi.org/10.1093/bib/bbx156.
• Hidalgo-Cantabrana, C.; Moro-García, M.A.; Blanco-Míguez, A.; Fdez-Riverola, F.; Lourenço, A.; Alonso-Arias, R. and Sánchez, B.*. 2017. In silico screening of the human gut metaproteome identifies Th17-promoting peptides encrypted in proteins of commensal bacteria. Frontiers in Microbiology. 8:1726.
• Hidalgo-Cantabrana, C.; Crawley, A.B.; Sanchez, B. and Barrangou, R. 2017. Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum. Frontiers in Microbiology. 8:1851.
• Milani, C.; Duranti, S.; Bottacini, F.; Casey, E.; Turroni, F.; Mahony, J.; Belzer, C.; Delgado, S.; Arboleya, S.; Mancabelli, L.; Lugli, G.A.; Rodriguez, J.M.; Bode, L.; de Vos, W.; Gueimonde, M.;
• Margolles, A.; van Sinderen, D.* and Ventura, M.*. 2017. The first microbial colonizers of the human gut: composition, activities and health implications of the infant gut microbiota. Microbiology and Molecular Biology Reviews 81:e00036-17.
• Ruiz, L.; Delgado, S.; Ruas-Madiedo, P.; Sánchez, B.* and Margolles, A. 2017. Bifidobacteria and their molecular communication with the immune system. 2017. Frontiers in microbiology. En prensa. doi: 10.3389/fmicb.2017.02345
• Ladero, V. and Sánchez, B.*. 2017. Molecular and technological insights into the aerotolerance of anaerobic probiotics: examples from bifidobacteria. Current Opinion in Food Science. 14:110-115.
• Blanco-Míguez, A.; Fdez-Riverola, F.; Lourenço, A. and Sánchez, B.*. 2017. P4P: a peptidome-based strain-level genome comparison web tool. NAR. 45: W265–W269.
• Blanco-Míguez, A.; Gutiérrez-Jácome, A.; Fdez-Riverola, F.; Lourenço, A. and Sánchez, B.*. 2017. MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota. Database-The journal of biological databases and curation. 2017:baw157 doi: 10.1093/database/baw157

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• Martínez, N.; Luque, R.; Olivares, M.; Margolles, A. and Bañuelos, O*. 2017. Resequencing of the Bifidobacterium breve CECT 7263 Strain Genome. Genome Announcements 5: e00299-17.
• Inturri, R.; Ventura, M.; Ruas-Madiedo, P.; Lugli, G.A. and Blandino, G.2017. Complete genome sequence of Bifidobacterium longum W11 (LMG P-21586), used as a probiotic strain. Genome Announcement 5:e01659-16.
• Hidalgo-Cantabrana, C.; Delgado, S.; Ruiz, L.; Ruas-Madiedo, P.; Sánchez, B. and Margolles, A. 2017. Bifidobacteria and their health-promoting effects.  Microbiology Spectrum 5(3): BAD-0010-2016.
• Muñoz, E. and Sánchez, B. ¡QUE INVENTEN ELLOS! PERO CONSUMIMOS NOSOTROS. 2017. Sistema digital. https://www.fundacionsistema.com/que-inventen-ellos-pero-consumimos-nosotros/
• Sánchez, B. ¿En qué investigas? El diálogo molecular entre nuestras bacterias y el sistema inmunológico. 2017. Blog Dciencia. http://dciencia.es/dialogo-molecular-bacterias-inmunologico/
• Sánchez, B. ¿Por qué España no volverá a tener Premio Nobel de Medicina?. 2017. Blog Dciencia. http://dciencia.es/por-que-espana-no-volvera-a-tener-premio-nobel-de-medicina/
• Sánchez, B. Virus gigantes, carne de pollo sin pollo, la batalla de los CRISPR y un ordenador manejado por un cerebro. 2017. Blog Dciencia. http://dciencia.es/virus-gigantes-carne-de-pollo-sin-pollo-la-batalla-de-los-crispr-y-un-ordenador-manejado-por-un-cerebro/
• Sánchez, B. Pa ciencia la mía- Capítulo 1 : de fósiles, tomates, cristales de tiempo, ordenadores cuánticos y neanderthales 2017. Blog Dciencia. http://dciencia.es/pa-ciencia-la-mia-capitulo-1/

• Álvarez-Calatayud G, Margolles A. 2016. Dual-coated lactic acid bacteria: an emerging innovative technology in the field of probiotics. Future Microbiology 11:467-475.
• Arboleya S, Sánchez B, Solís G, Fernández N, Suárez M, Hernández-Barranco A, Milani C, Margolles A, de los Reyes-Gavilán CG, Ventura M, Gueimonde M. 2016. Impact of prematurity and perinatal antibiotics on the developing intestinal microbiota: a functional inference study. International Journal of Molecular Sciences 17:649 (14 páginas).
• Blanco-Míguez, A.; Gutiérrez-Jácome, A.; Pérez-Pérez, M.; Pérez-Rodríguez, G.; Catalán-García, S.; Fernández-Riverola, F.; Lourenço, A.; Sánchez, B. 2016. From amino acid sequence to bioactivity: Scientific evidence on antitumor peptides. Protein Science 25:1084-1095.
• Blanco-Míguez A, Meier-Kolthoff JP, Gutiérrez-Jácome A, Göker M, Fdez-Riverola F, Sánchez B, Lourenço A. 2016. Improving phylogeny reconstruction at the strain level using peptidome datasets. PLoS Comput Biol 12(12):e1005271.
• Blanco-Míguez A, Gutiérrez-Jácome A, Fernández-Riverola F, Lourenço A, Sánchez B. 2016. A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis. Food Microbiology 60:137-141.
• Comino, I.; Bernardo, D.; Bancel, E.; Moreno, M.L.; Sánchez, B.; Barro, F.; Suligoj, T.; Ciclitira, P.; Cebolla, A.; Knight, S.; Branlard, G.; Sousa, C. 2016. Identification and molecular characterization of oat peptides implicated on coeliac immune response. Food and Nutrition Research 60:30324.
• Cuervo, A.; Hevia, A.; López, P.; Suárez, A.; Díaz-Donado, C.; Sánchez, B.; Margolles, A.; González, S. 2016. Phenolic compounds from red wine and coffee are associated with specific intestinal microorganisms in allergic subjects. Food & Function 7:104-109.
• Duranti S, Milani C, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Sánchez B, Margolles A, van Sinderen D, Ventura M. 2016. Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis. Scientific Reports 6:23971 (10 páginas).
• Ferrario, Ch.; Milani, Ch.; Mancabelli, L.; Lugli, G.A.; Duranti, S.; Mangifesta, M.; Viappiani, A.; Turroni, F.; Margolles, A.; Ruas-Madiedo, P.; van Sinderen, D.; Ventura, M. 2016. Modulation of the eps-ome transcription of bifidobacteria through simulation of human intestinal environment. FEMS Microbiology Ecology 92: fiw056.
• Flórez AB, Sierra M, Ruas-Madiedo P, Mayo B. 2016. Susceptibility of lactic acid bacteria, bifidobacteria and other bacteria of intestinal origin to chemotherapeutic agents. International Journal of Antimicrobial Agents 48: 547–550.
• Gutiérrez D, Hidalgo-Cantabrana C, Rodríguez A, García P, Ruas-Madiedo P. 2016. Monitoring in real time the formation and removal of biofilms from clinical related pathogens using an impedance-based technology. PLoS ONE 11(10): e0163966.
• Gutiérrez-Díaz I, Fernández-Navarro T, Sánchez B, Margolles A, González S. 2016. Mediterranean diet and faecal microbiota: a transversal study. Food & Function 7:2347-2356
• Hevia, A.; Milani, A.; López, P.; Cuervo, A.; Díaz, C.; Turroni, F.; González, S.; Suárez, A.; Gueimonde, M.; Ventura, M.; Sánchez, B.; Margolles, A. 2016. Allergic patients with long-term asthma display low levels of Bifidobacterium adolescentis. PLoS ONE 11:e0147809 (11 páginas).
• Hidalgo-Cantabrana C, Algieri F, Rodriguez-Nogales A, Vezza T, Martínez-Camblor P, Margolles A, Ruas-Madiedo P, Gálvez J. 2016. Effectof a ropy exopolysaccharide-producing Bifidobacterium animalis subsp. lactis strain orally administered on DSS-induced colitis mice model. Frontiers in Microbiology 7: article 868.
• Linares, DM.; Del Rio, B.; Redruello, B.; Ladero, V.; Martin, MC.; Fernandez, M.; Ruas-Madiedo, P.; Alvarez, MA. 2016. Comparative analysis of the in vitro cytotoxicity of the dietary biogenic amines tyramine and histamine. Food Chemistry 197:658-663.
• López P, de Paz B, Rodríguez-Carrio J, Hevia A, Sánchez B, Margolles A, Suarez A. 2016. Th17 responses and natural IgM antibodies are related to gut microbiota composition in systemic lupus erythematosus patients. Scientific Reports 6:24072 (12 páginas).
• López P, Sánchez B, Margolles A, Suarez A. 2016. Intestinal dysbiosis in SLE: cause or consequence? Current Opinion in Rheumatology 28:515-522.
• Padilla B, Delgado S, García-Garrote F, Rodríguez JM, Romero B. 2016. Microbiological diagnosis of bacterial infection associated with delivery and postpartum. Enfermedades Infecciosas y Microbiología Clínica. 34:309-314.
• Prior, P.; Ailloud, F.; Dalsing, B.; Remenant, B.; Sanchez, B.; Allen, C. 2016. Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species. BMC genomics 17:90.
• Ríos-Covian D, Cuesta I, Alvarez-Buylla JR, Ruas-Madiedo P, Gueimonde M, de los Reyes-Gavilán CG. 2016. Bacteroides fragilis metabolices exopolysaccharides produced by bifidobacteria. BMC Microbiology 16:150 (8 pages).
• Ríos-Covián, D.; Sánchez, B.; Cuesta, I.; Hernández-Barranco, A.; Gueimonde, M.; González De los Reyes-Gavilán, C. 2016. Glucolytic fingerprinting reveals metabolic groups within the genus Bifidobacterium: an exploratory study. Beneficial Microbes 7:265-273.
• Rios-Covián, D.; Ruas-Madiedo, P.; Margolles, A.; Gueimonde, M.; de los Reyes-Gavilán, CG.; Salazar, N. 2016. Intestinal short chain fatty acids and their link with diet and human health. Frontiers in Microbiology 7:185.
• Ruiz L, Hidalgo-Cantabrana C, Blanco-Míguez A, Lourenço A, Sánchez B, Margolles A. 2016. Tackling probiotic and gut microbiota functionality through proteomics. Journal of Proteomics 147:28-39.
• Ruiz L, Delgado S, Ruas-Madiedo P, Margolles A, Sánchez B. 2016. Proteinaceous molecules mediating Bifidobacterium-host interactions. Frontiers in Microbiology 7: article 1193.
• Salazar, N.; Gueimonde, M.; de los Reyes-Gavilán, C.G., Ruas-Madiedo, P. 2016. Exopolysaccharides produced by lactic acid bacteria and bifidobacteria as fermentable substrates by the intestinal microbiota. Critical Reviews in Food Science and Nutrition 56:1440-1453.
• Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Margolles A, Seifert J, Barbas C, Moya A, Ferrer M. 2016. HIV infection results in metabolic alterations in the gut microbiota different from those induced by other diseases. Scientific Reports 6:26192 (10 páginas).
• Valdés-Varela, L.; Alonso-Guervos, M.; García-Suárez, O.; Gueimonde, M.; Ruas-Madiedo, P. 2016. Screening of bifidobacteria and lactobacilli able to antagonize the cytotoxic effect of Clostridium difficile upon intestinal epithelial HT29 monolayer. Frontiers in Microbiology 7:577.
• Valdés-Varela, L.; Hernández-Barranco, A.M.; Ruas-Madiedo, P.; Gueimonde, M. 2016. Effect of Bifidobacterium upon Clostridium difficile growth and toxicity when co-cultured in different prebiotic substrates. Frontiers in Microbiology 7:738.
• Živkovic, M.; Miljkovic, MS; Ruas-Madiedo, P.; Markelic, MB.; Veljovic, K.; Tolinac, M.; Sokovic, S.; Korac, A.; Golic, N. 2016. EPS-SJ exopolisaccharide produced by the strain Lactobacillus paracasei subsp. paracasei BGSJ2-8 is involved in adhesion to epithelial intestinal cells and decrease on E. coli association to Caco-2 cells. Frontiers in Microbiology 7:286.

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• Alarcón T, D’Auria G, Delgado S, del Campo R, Ferrer M. 2016. Microbiota. Procedimientos en Microbiología Clínica Nº54. Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC).
• Delgado S, García-Garrote F, Padilla B,  Rodríguez JM, Romero B. 2016. Diagnóstico microbiológico de la infección bacteriana asociada al parto y puerperio. Procedimientos en Microbiología Clínica Nº59. Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC).

PUBLICACIONES EN REVISTAS DE DIVULGACIÓN

• Ruas-Madiedo, P. 2016. RedBAL. Revista |P|A|N| No. 2 pp. 59 (ISSN: 2445-3609).
  Sánchez B. 2016. Grupo de Investigación Funcionalidad y Ecología de Microorganismos Beneficiosos (MicroHealth) y EBT Microviable Therapeutics. Revista de la Asociación Asturiana de Enfermos de Colitis Ulcerosa y Enfermedad de Crohn. Nº74. http://www.accuasturias.org/archivos/591_accu-actual-n-74.pdf.
• Margolles, A., Ruas-Madiedo, P., Sánchez, B., Delgado, S. 2016. Grupo “Funcionalidad y Ecología de Microorganismos beneficiosos” (MincroHealth). Revista SEM@foro. Especial Microbiología de los Alimentos. No. 62 pp. 43-44 (ISSN: 2254-4399)

• Molinero, N., Sabater, C., Calvete, I., Delgado, S., Ruas-Madiedo, P., Ruiz, L., and Margolles, A. «Mechanisms of Gut Microbiota Modulation by Food, Probiotics, Prebiotics and More». IN: Comprehensive Gut Microbiota, ed. Glibetic, N., Elsevier Inc. (Ed.) (ISBN: 9780128220368, https://doi.org/10.1016/B978-0-12-819265-8.00095-4) 2022, Pp. 84-101.
• Martínez, M., Sabater, C., Montero, I., Barrientos, D., Margolles, A., Hidalgo-Cantabrana, C., Delgado, S. 2022. «Microbioma y envejecimiento saludable». A. Coto (Coord.). En: Consorcio ELDER: el reto de envejecer. Ediciones Trea. ISBN: 978-84-18932-71-7.
• Molinero, N., Margolles, A., Delgado, S. 2022. «Microbiota biliar». Libro: G. Álvarez-Calatayud y F. Guarner (eds.). En: Probióticos, prebióticos y salud. Evidencia científica. 2ª edición. Editorial Ergon. ISBN: 978-84-18576-49-2
• Marcos, R., Ruiz, L., Margolles, A. 2022. «Las microbiota definidas». G. Álvarez-Calatayud y F. Guarner (eds.). En: Probióticos, prebióticos y salud. Evidencia científica. 2ª edición. Editorial Ergon. ISBN: 978-84-18576-49-2.
• Sabater, C., Calvete, I., Ruiz, L., Margolles, A. 2022. «Microbiota intestinal». G. Álvarez-Calatayud y F. Guarner (eds.). En: Probióticos, prebióticos y salud. Evidencia científica. 2ª edición. Editorial Ergon. ISBN: 978-84-18576-49-2.
• Calvete, I., Margolles, A., Ruiz, L. 2022. «Trasplante de microbiota fecal: perspectiva histórica.» G. Álvarez-Calatayud y F. Guarner (eds.). En: Probióticos, prebióticos y salud. Evidencia científica. 2ª edición. Editorial Ergon. ISBN: 978-84-18576-49-2.
• Ruas-Madiedo P. “Detection, Isolation, and Purification of Bifidobacterial Exopolysaccharides”. IN: Bifidobacteria: Methods and Protocols. D. van Sinderen and M. Ventura (eds). Springer Nature, New York, USA. (ISBN 978-1-0716-1273-6; https://doi.org/10.1007/978-1-0716-1274-3) 2021 Chapter 9, Pp. 101-115
• Ruiz, L., Sánchez, B., Margolles A. «Determination of bile salt hydrolase activity in bifidobacteria». IN: Bifidobacterial: methods and Protocols, Methods in Molecular Biology, van Sinderen and Ventura (eds) Humana Press. 2021. ISBN 978-1-0716-1273-6. Pp. 149-155
• Esteban-Torres, M., Ruiz, L., Sánchez-Gallardo, R., van Sinderen, D.»Isolation of Chromosomal and Plasmid DNA from Bifidobacteria.» IN: Bifidobacterial: methods and Protocols, Methods in Molecular Biology, van Sinderen and Ventura (eds) Humana Press. 2021. ISBN 978-1-0716-1273-6. Pp. 21-29
• Margolles, A., Ruiz, L. «Methods for the isolation and recovery of bifidobacteria.» IN: Bifidobacterial: methods and Protocols, Methods in Molecular Biology, van Sinderen and Ventura (eds) Humana Press. 2021. ISBN 978-1-0716-1273-6. Pp 1-12
• Ruiz, L., Esteban-Torres, M., van Sinderen, D. «A resource for cloning and expression vectors designed for bifidobacteria: overview of available tools and biotechnological applications.» IN: Bifidobacterial: methods and Protocols, Methods in Molecular Biology, van Sinderen and Ventura (eds) Humana Press. 2021. ISBN 978-1-0716-1273-6. Pp. 157-182
• Ruiz, L., Valdés, L., Sánchez, B., Ruas-Madiedo, P., Delgado, S., Margolles, A. “Factores implicados en el desarrollo de la microbiota”. EN: Inmunonutrición. Estilo de vida 2ª Ed., A. Marcos, S. Gómez-Martinez (eds.). Editorial Médica Panamericana, CLAVE: CL. (ISBN: 9788491101208) 2020 Capítulo 26, Pp: 389-402
• Ruas-Madiedo P., Margolles, A., Fernández, M. “La microbiota de los quesos de Asturias”. EN: Boletín de Ciencias y Tecnología nº 55, Real Instituto de Estudios Asturianos (Ed.), (ISSN: 2695-2815) 2020, Tomo I, Pp. 285-303.
• González-González, F., Margolles, A. Ruas-Madiedo P. “Suero lácteo, un subproducto de quesería para aplicaciones biotecnológicas”. EN: Boletín de Ciencias y Tecnología nº 55, Real Instituto de Estudios Asturianos (Ed.), (ISSN: 2695-2815) 2020, Tomo I, Pp. 313-327.
• Calvete, I., Ruiz, L. Delgado, S. Ruas-Madiedo P., Margolles, A. “Técnicas microbiológicas dependientes e independientes de cultivo en la industria láctea”. EN: Boletín de Ciencias y Tecnología nº 55, Real Instituto de Estudios Asturianos (Ed.), (ISSN: 2695-2815) 2020, Tomo II, Pp. 329-338.
• Ruas-Madiedo, P. and Rodríguez, A. 2017. “Non-starter bacteria “functional” cultures. IN: Starter Cultures in Food Production. Speranza B.; Bevilacqua A.; Corbo, M.A.; Sinigaglia M. (eds.) Wiley-Blackwell, Oxford, UK. CLAVE: CL (ISBN: 978-1-118-93376-3) Pp. 64-78.
• Rodríguez, A.; Martínez, B.; García, P.; Ruas-Madiedo, P. and Sánchez, B. 2017. “New trends in dairy Microbiology: towards safe and healthy products” IN: Starter Cultures in Food Production. Speranza B.; Bevilacqua A.; Corbo, M.A.; Sinigaglia M. (eds.) Wiley-Blackwell, Oxford, UK. CLAVE: CL (ISBN: 978-1-118-93376-3). Pp. 299-323.
• Delgado, S, Ruiz, L.; Hevia, A.; Ruas-Madiedo, P.; Margolles, A. and Sánchez, B. 2017. “Evidence of the in vitro and in vivo immunological relevance of bifidobacteria”. IN: The Bifidobacteria and Related Organisms. Mattarelli P, Biavati B, Holzapfel WH, Wood BJB (eds.) Elsevier-Academic Press, Oxford, UK. CLAVE: CL (ISBN: 978-0-12-805060-6) Pp. 295-305.
• Castro-Bravo, N.; Sánchez, B. Margolles, A. and Ruas-Madiedo, P. 2017. “Biological activities and applications of bifidobacterial exopolysaccharides: from the bacteria and host perspective”. IN: The Bifidobacteria and Related Organisms. Mattarelli P, Biavati B, Holzapfel WH, Wood BJB (eds.) Elsevier-Academic Press, Oxford, UK. CLAVE: CL (ISBN: 978-0-12-805060-6) Pp. 177-193.
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• Ruiz, L.; Gueimonde, M.; Ruas-Madiedo, P.; Margolles, A.; and Sánchez, B. 2016. Improving probiotics for functional foods. IN:  Advances in Food Biotechnology. Ravishankar Rai V. (ed.) Wiley-Blackwell, Oxford, UK (ISBN: 978-1-118-86455-5). Pp. 351-367.
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